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Home > Learn > Server Guide

Server Guide

Table of Contents

  1. Introduction
  2. Installation
    1. GUI Installer (Distributed Pipeline Server Installer)
      1. Requirements
      2. Downloading
      3. Start the Installer
        1. Select Components
        2. Install Grid Engine
        3. Install Pipeline
        4. Install Tools
        5. Finish Install
        6. Start the Server
      4. Troubleshoot
    2. Command Line Installation
      1. Requirements
      2. Downloading
      3. Starting the server
  3. Configuration
    1. General
      1. Hostname and port
      2. Temporary directory
      3. Scratch directory
      4. Log file location
      5. Use privilege escalation and Enable guests
      6. Persistence
      7. Days to persist session status
      8. History directory
      9. Crawler persistence URL
      10. Server library
    2. Grid
      1. Grid engine native specification
      2. Job name prefix
      3. Grid complex resource attributes
      4. Grid Variables Policy
      5. Max number of parallel submission threads
      6. Max number of resubmissions for “error stated” jobs
      7. Grid total slots
      8. Array jobs
      9. Grid plugin
      10. Finished job retrieval method
      11. Pipeline user is a grid engine admin
      12. Grid job accounting
    3. Access
      1. Server admins
      2. Directory access control
      3. User management
      4. Workflow management
    4. Mappings
      1. Packages
      2. Executables
      3. Utilities
    5. Advanced
      1. Failover
      2. Log email
      3. Network
      4. Maximum number of threads for active jobs
      5. HTTP query server
      6. Automatically clean up old files
      7. Maximum number of metadata threads
      8. Warn when free disk space is low
      9. Server status
      10. Directory source recursive timeout
      11. External network access queue
      12. Validation warning
      13. Check and verify output files
      14. Test server library
  4. Authentication
    1. Authentication Quickstart
  5. Monitor and Manage
  6. Grid Plugin API
  7. Grid Stat Plugin API

Learn

Manuals
  • Quick Start Guide
  • User Guide
  • Server Guide
  • Handbook
  • XML Overview for Developers
  • JavaDocs
Video Tutorials
  • Pipeline Basics
  • Pipeline Training Events
More Help
  • FAQs
  • Contact Us
Resources
  • Workflow Library
  • Example Workflows
  • Glossary

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Software supported by:
NIH-NCRR 9P41EB015922-15 and 2-P41-RR-013642-15
NIH-NCRR U54 RR021813
NIH-NIMH R01 MH071940

  • Get Started
    • Download
    • Become a Collaborator
    • Testimonials
    • Acknowledging Pipeline
    • Publications
  • Products & Services
    • Pipeline Software
    • Pipeline Web App
    • Pipeline Web Start
    • Distributed Pipeline Server
    • Pipeline Server on Amazon EC2
    • Server Plugins
    • Workflow Miner
    • Brain Viewer
    • Brain Book: Color Paint in 3D
    • Brain Puzzle
  • Explore
    • Features
    • Usage Stats
    • Workflow Library
  • Learn
    • Quick Start Guide
    • User Guide
    • FAQs
    • Server Guide
    • Publications
    • Training
    • Video Demo
    • Web App beta
    • The Experts
    • JavaDocs
    • Contact Us
    • LONI Pipeline Handbook
  • News