Pipeline Features

The LONI Pipeline is a free workflow application primarily aimed at computational scientists. With the LONI Pipeline, users can quickly create workflows that take advantage of all the greatest tools available in neuroimaging, genomics, bioinformatics, etc. Learn more >

Cross Platform Compatible

Work in the operating system that suits you best. Connect from your client to execute processing and analysis remotely on other operating systems.

See software requirements

Cross Platform

Simple User Interface

Free yourself from the hassle of being bogged down by system administration and focus energy on current research problems.

See screenshots


Grid Support

Take advantage of a supercomputing environment by automatically parallelizing data-independent programs in a given analysis.

See supported grid plugins


Pipeline Library

Access hundreds of predefined neuroimaging solutions, including data, modules and workflows that are automatically updated.

See modules library




  • Pipeline 6.4 release

    (November 1, 2016) Pipeline version 6.4 is available for download. This version includes new options for editing server libraries, improvements to the user interface, validation, study modules, and the stability of the database, as well as a whole lot of bug fixes.
    Along with the release of the new client version, the LONI Pipeline Web App beta is now available for use. To help users get started, we’ve created a web app user guide […]

  • Pipeline 6.3 released

    (April 21, 2016) Pipeline version 6.3 is available for download. This version includes better overall server performance as well as many bug fixes to conditional modules, data extraction, restarting instances and more. For a full list of details read Release Notes.