Examples of Pipeline workflows for computational neuroscience
This includes a list of complete Pipeline Neuroimaging Solutions (data, modules and workflows) that are developed, included, and documented as part of the latest LONI Pipeline environment release, including the following subjects:
- MDT Atlasing Workflow
- Automated Tissue Volume Extraction Workflow
- Automated 56-ROI Brain Volume Extraction Workflow
- Global Shape Analysis (GSA) Workflow
- Local Shape Analysis (LSA) Workflow
- Cortical Surface Extraction Workflow
- Automated Complete Cortical Thickness Workflow
- SVPASEG Workflow
- DTI/DSI Workflow
- First Level with-in subject fMRI processing Workflow
- Higher Level 2 group comparison fMRI processing Workflow
- BrainSuite Cortical Surface Extraction
- Cortical Surface Labeling
- Direct Hippocampal Mapping
- DICOM Anonymizer
- DICOM Summarize
- IRMA Workflow
- Automatic Registration Toolbox
- PCA Registration
- Rat Brain Functional Analysis
- Mouse Workflows
- Bioinformatics and Genomics Workflows
- Pipeline invocation of R-scripts
- Template Workflow Usage/Docs page
- Committing Pipeline Workflows to core Pipeline server library
