Explore

The LONI Pipeline workflow application gives users the necessary technology to describe their executables in a graphical interface (i.e. create a module). Pipeline allows users to connect their modules, creating complex analyses without the need for complex code in a scripting language. Pipeline streamlines the management of intermediate data in a script by passing data between programs automatically, eliminating the need to manage these transitions manually. Once you have created a module for use in the LONI Pipeline, you can save it into your personal library and reuse it in other workflows you create by simply dragging and dropping it in. This helps with the maintenance and management of your modules.

Features

The LONI Pipeline offers a host of features that enhance and enrich neuroimaging research. Read more >

Who Uses Pipeline?

A distributed LONI Pipeline client-server infrastructure is in use at the following institutions. Please contact us if you would like to get your organization on this list.

University of California, Los Angeles	University of California, Irvine	Cincinnati Children’s Hospital	Emory University
University of Pittsburgh	University of Southern California	IRCCS Centro San Giovanni di Dio – FBF	Australian National University
University of California, San Francisco	Stanford University	California Institute of Technology	University of Pennsylvania
Northwestern University	University of Cincinnati	University of Illinois at Chicago	Ohio State University
Washington University in St. Louis	University of Texas at Austin	University of Texas Health Science Center at San Antonio	St. Jude Children’s Research Hospital
University of London	Queensland Institute of Medical Research	McGill University	NeuGrid4You
National Institutes of Health	Biomedical Informatics Research Network	National Non-Human Primate Research Centers	Johns Hopkins University
University of Wisconsin–Madison	Pennsylvania State University	Brigham and Women’s Hospital	Harvard University
University of Chicago	Frederick National Laboratory for Cancer Research	University of Michigan

Grid Monitor

Pipeline has a designated server called Cranium. You can follow the usage statistics and filter by job count, CPU hours or client connections for individual packages or all tools combined. Learn more >

LONI Cranium Library

The LONI Cranium Library Navigator offers Pipeline workflows, modules, data online with ability to view and/or run directly from the web using Pipeline Web Start.

Example Workflows

Browse an archive of workflows on our Twiki collaborative space.