Module Detail Information

Name:Replace Sam Header
Type: Module
Short URL:
http://bit.ly/1C54PxY
Description:Replace the SAMFileHeader in a SAM file with the given header. Validation is minimal. It is up to the user to ensure that all the elements referred to in the SAMRecords are present in the new header. Sort order of the two input files must be the same.
Executable:
/java
Input Parameters:
 - Tmp dir
 - Verbosity
 - Quiet
 - Validation stringency
 - Compression level
 - Max records in ram
 - Create index
 - Create md5 file
 - Jar File
 - Input
 - Header
Output Parameters:
 - Output
File size:12.16 KB
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