Module Detail Information

Name:Mark Duplicates
Type: Module
Short URL:
Description:Examines aligned records in the supplied SAM or BAM file to locate duplicate molecules. All records are then written to the output file with the duplicate records flagged.
Input Parameters:
 - Tmp dir
 - Verbosity
 - Quiet
 - Validation stringency
 - Compression level
 - Max records in ram
 - Create index
 - Create md5 file
 - Input
 - Jar File
 - Remove Duplicates
 - Assume Sorted
 - Max Sequences for Disk Read Ends Map
 - Max File Handles for Read Ends Map
 - Read Name Regex
 - Optical Duplicate Pixel Distance
Output Parameters:
 - Output
 - Metrics File
File size:15.97 KB
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