Module Detail Information

Name:Compare SAMS
Type: Module
Short URL:
http://bit.ly/1C54SJZ
Description:Compares the headers of the two input SAM or BAM files, and, if possible, the SAMRecords. For SAMRecords, compares only the readUnmapped flag, reference name, start position and strand. Reports the number of SAMRecords that match, differ in alignment, are mapped in only one input, or are missing in one of the files
Executable:
/java
Input Parameters:
 - Jar File
 - Temp Location
 - Verbosity
 - Quiet
 - Validation Stringency
 - Compression Level
 - Max Records in RAM
 - Create Index
 - Create MD5 File
 - Input
Output Parameters:
File size:11.59 KB
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