Module Detail Information

Name:ReconAll
Type: Module
Short URL:
http://bit.ly/1BuiGKF
Description:Performs all steps of the ReconAll process: 1. Motion Correction and Conform 2. NU (Non-Uniform intensity normalization) 3. Talairach transform computation 4. Intensity Normalization 1 5. Skull Strip 6. EM Register (linear volumetric registration) 7. CA Intensity Normalization 8. CA Non-linear Volumetric Registration 9. Remove neck 10. EM Register, with skull 11. CA Label (Aseg: Volumetric Labeling) and Statistics 12. Intensity Normalization 2 (start here for control points) 13. White matter segmentation 14. Edit WM With ASeg 15. Fill (start here for wm edits) 16. Tessellation (begins per-hemisphere operations) 17. Smooth1 18. Inflate1 19. QSphere 20. Automatic Topology Fixer 21. Final Surfs (start here for brain edits for pial surf) 22. Smooth2 23. Inflate2 24. Cortical Ribbon Mask 25. Spherical Mapping 26. Spherical Registration 27. Spherical Registration, Contralater hemisphere 28. Map average curvature to subject 29. Cortical Parcellation (Labeling) 30. Cortical Parcellation Statistics 31. Cortical Parcellation mapped to ASeg
Executable:
/recon-all.sh
Input Parameters:
 - Input Volume
 - Subject ID
 - Subject Directory
 - Input Flow Control
 - Overwrite
Output Parameters:
 - Left Hemisphere Pial Surface
 - Right Hemisphere Pial Surface
File size:28.21 KB
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