Module Detail Information

Name:Wordmatch
Type: Module
Short URL:
http://bit.ly/1B7EcRU
Description:wordmatch finds all regions of identity (exact matches) of a specified minimum size of two input sequences. These regions are reported in a standard EMBOSS alignment file and in standard EMBOSS sequence feature files.
Executable:
/wordmatch
Input Parameters:
 - A Sequence
 - B Sequence
 - A Start
 - A End
 - A Reverse
 - A Ask
 - A Nucleotide
 - A Protein
 - A Lower Case
 - A Upper Case
 - A Format
 - A Database Name
 - A Entry Name
 - A UFO Features
 - A Features Format
 - A Features File
 - B Start
 - B End
 - B Reverse
 - B Ask
 - B Nucleotide
 - B Protein
 - B Lower Case
 - B Upper Case
 - B Format
 - B Database Name
 - B Entry Name
 - B UFO Features
 - B Features Format
 - B Features File
 - Turn Off Prompts
 - Standard Output
 - Filter
 - Options
 - Debug
 - Verbose
 - Help
 - Report Warnings
 - Report Errors
 - Report Fatal Errors
 - Report Dying Program Messages
 - Word Size
 - Version
 - Alignment Format
 - File Name Extension
 - Output Base Filename
 - Alignment Width
 - Show Accession Number in Header
 - Show Description in Header
 - Show Full USA
 - Show Full Sequence
 - Output A Features Format
 - A Features Filename
 - A Features Filename Extension
 - A Features Base Filename
 - A Separate File for Each Entry
 - Output B Features Format
 - B Features Filename
 - B Features Filename Extension
 - B Features Base Filename
 - B Separate File for Each Entry
 - Dump Matches as Alignments
 - Dump Matches as Feature Files
Output Parameters:
 - Output File
 - Output Directory
 - Output A Features UFO
 - A Features Output Directory
 - Output B Features UFO
 - B Features Output Directory
 - Log File
 - Log File Output Directory
File size:37.33 KB
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