Module Detail Information

Name:Wordcount
Type: Module
Short URL:
http://bit.ly/1B7EeJt
Description:wordcount counts and extracts all possible unique sequence words of a specified size in one or more DNA sequences. It writes an output file giving all possible words for that word size with a count of each word in the input sequences. Optionally, only words occuring a specified minimum number of times are reported.
Executable:
/wordcount
Input Parameters:
 - Sequences
 - Start
 - End
 - Reverse
 - Ask
 - Nucleotide
 - Protein
 - Lower Case
 - Upper Case
 - Format
 - Database Name
 - Entry Name
 - UFO Features
 - Features Format
 - Features File
 - Turn Off Prompts
 - Standard Output
 - Filter
 - Options
 - Debug
 - Verbose
 - Help
 - Report Warnings
 - Report Errors
 - Report Fatal Errors
 - Report Dying Program Messages
 - Version
 - Size of Word
 - Minimum Word Count
Output Parameters:
 - Output Directory
 - Output File
File size:24.69 KB
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