Module Detail Information

Name:Prettyplot
Type: Module
Short URL:
http://bit.ly/1B7EcBo
Description:prettyplot draws a plot of the input sequence alignment. The sequences are rendered in pretty formatting on the specified graphics device. Drawing options control the appearance of the image, such as boxes, colour and shading for highlighting conserved regions.
Executable:
/prettyplot
Input Parameters:
 - Sequence
 - Start
 - End
 - Reverse
 - Ask
 - Nucleotide
 - Protein
 - Lower Case
 - Upper Case
 - Format
 - Database Name
 - Entry Name
 - UFO Features
 - Features Format
 - Features File
 - Turn Off Prompts
 - Standard Output
 - Filter
 - Options
 - Debug
 - Verbose
 - Help
 - Report Warnings
 - Report Errors
 - Report Fatal Errors
 - Report Dying Program Messages
 - Graph Type
 - Graph Prompting
 - Graph Description
 - Graph Title
 - Graph Subtitle
 - Graph X-Axis Title
 - Graph Y-Axis Title
 - Version
 - Matrix File
 - Residues per Line
 - Residues Before a Space
 - Color Residues by Consensus Value
 - Color to Display Identical Residues
 - Color to Display Similar Residues
 - Color to Display Other Residues
 - Color Residues by Table
 - Shading
 - Identical, Similar, Related Values
 - Only Match Identical
 - Display Pretty Boxes
 - Color Boxes
 - Boxes Background Color
 - Display Sequence Names
 - Margin Size
 - Display Residue Number
 - Display Options
 - Plurality
 - Display Consensus
 - Allow Collisions in Consensus
 - Collision Check
 - Show Residue Scores
 - Set Page to Portrait
Output Parameters:
 - Graph Output File
 - Graph Output Directory
File size:37.71 KB
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