Module Detail Information

Name:Pepstats
Type: Module
Short URL:
http://bit.ly/1B7EfwX
Description:pepstats reads one or more protein sequences and writes an output file with various statistics on the protein properties. This includes: Molecular weight Number of residues Average residue weight Charge Isoelectric point For each type of amino acid: number, molar percent, DayhoffStat For each physico-chemical class of amino acid: number, molar percent Probability of protein expression in E. coli inclusion bodies Molar extinction coefficient (A280) Extinction coefficient at 1 mg/ml (A280)
Executable:
/pepstats
Input Parameters:
 - Sequence
 - Start
 - End
 - Reverse
 - Ask
 - Nucleotide
 - Protein
 - Lower Case
 - Upper Case
 - Format
 - Database Name
 - Entry Name
 - UFO Features
 - Features Format
 - Features File
 - Output Directory
 - Standard Output
 - Filter
 - Options
 - Debug
 - Verbose
 - Help
 - Report Warnings
 - Report Errors
 - Report Fatal Errors
 - Report Dying Program Messages
 - Turn Off Prompts
 - Use Monoisotopic Weights
 - MW Data
 - Amino Acid Properties
 - Don't Include Charges
Output Parameters:
 - Output File
File size:26.9 KB
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