Module Detail Information

Name:Pepcoil
Type: Module
Short URL:
http://bit.ly/1B7Efx2
Description:pepcoil calculates the probability of a coiled-coil structure for windows of (by default) 28 residues through a protein sequence using the method of Lupas A, van Dyke M & Stock J (1991); Science 252:1162-4. It reads one or more sequences and writes a standard EMBOSS report file including the location and score of the putative coiled-coil structures and their score for each input sequence. Optionally, coiled coil regions, non-coiled coil regions and coil frameshifts are reported.
Executable:
/pepcoil
Input Parameters:
 - Sequence
 - Start
 - End
 - Reverse
 - Ask
 - Nucleotide
 - Protein
 - Lower Case
 - Upper Case
 - Format
 - Database Name
 - Entry Name
 - UFO Features
 - Features Format
 - Features File
 - Output Format
 - Output Extension
 - Output Directory
 - Standard Output
 - Filter
 - Options
 - Debug
 - Verbose
 - Help
 - Report Warnings
 - Report Errors
 - Report Fatal Errors
 - Report Dying Program Messages
 - Output Base Filename
 - Show Accession Number in Report
 - Show Description in Report
 - Show Score in Report
 - Show Nucleotide Strand in Report
 - Show Full USA in Report
 - Maximum Total Hits
 - Maximum Hits for One Sequence
 - Turn Off Prompts
 - Window Size
 - Don't Report Coil Regions
 - Don't Show Coil Frameshifts
 - Report Non Coiled Regions
Output Parameters:
 - Output File
File size:28.98 KB
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