Module Detail Information

Name:PatmatDB
Type: Module
Short URL:
http://bit.ly/1B7EckV
Description:Patterns for patmatdb are based on the format of pattern used in the PROSITE database, with the difference that the terminating dot '.' and the hyphens, '-', between the characters are optional. For example: [DE](2)HS{P}X(2)PX(2,4)C means two Asps or Glus in any order followed by His, Ser, any residue other then Pro, then two of any residue followed by Pro followed by two to four of any residue followed by Cys. The search is case-independent, so AAA matches aaa. (Any string of at least 2 characters).
Executable:
/patmatdb
Input Parameters:
 - Sequence
 - Start
 - End
 - Reverse
 - Ask
 - Nucleotide
 - Protein
 - Lower Case
 - Upper Case
 - Format
 - Database Name
 - Entry Name
 - UFO Features
 - Features Format
 - Features File
 - Output Format
 - Output Extension
 - Output Directory
 - Standard Output
 - Filter
 - Options
 - Debug
 - Verbose
 - Help
 - Report Warnings
 - Report Errors
 - Report Fatal Errors
 - Report Dying Program Messages
 - Motif
 - Output Base Filename
 - Show Accession Number in Report
 - Show Description in Report
 - Show Score in Report
 - Show Nucleotide Strand in Report
 - Show Full USA in Report
 - Maximum Total Hits
 - Maximum Hits for One Sequence
 - Turn Off Prompts
Output Parameters:
 - Output File
File size:28.32 KB
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