Module Detail Information

Type: Module
Short URL:
Description:maskfeat reads a sequence with associated features and writes the same information to file but with features of the specified type omitted (masked). Sequence regions corresponding to the masked-out features are masked such that characters in those region are (optionally) converted to lower case and / or (optionally) replaced with the specified mask character.
Input Parameters:
 - Sequence
 - Start
 - End
 - Reverse
 - Ask
 - Nucleotide
 - Protein
 - Lower Case
 - Upper Case
 - Format
 - Database Name
 - Entry Name
 - UFO Features
 - Features Format
 - Features File
 - Output Sequence Format
 - Output Sequence Extension
 - Output Sequence Directory
 - Output Sequence Base file name
 - Turn Off Prompts
 - Standard Output
 - Filter
 - Options
 - Debug
 - Verbose
 - Help
 - Report Warnings
 - Report Errors
 - Report Fatal Errors
 - Report Dying Program Messages
 - Database Name to Add
 - Output Sequence Seperate Files
 - Output Sequence UFO Features
 - Output Sequence Features Format
 - Output Sequence Features File Name
 - Output Sequence Features Output Directory
 - Type
 - Convert to Lower Case
 - Mask Character
Output Parameters:
 - Output Sequence
File size:29.46 KB
View Source    Download    Open