Module Detail Information

Name:Digest
Type: Module
Short URL:
http://bit.ly/1B7EeJx
Description:This programs allows you to input one or more protein sequences and to specify one proteolytic agent from a list, which might be a proteolytic enzyme or other reagent. It will then write a report file containing the positions where the agent cuts, together with the peptides produced.
Executable:
/digest
Input Parameters:
 - Sequence
 - Start
 - End
 - Reverse
 - Ask
 - Nucleotide
 - Protein
 - Lower Case
 - Upper Case
 - Format
 - Database Name
 - Entry Name
 - UFO Features
 - Features Format
 - Features File
 - Output Format
 - Output Extension
 - Output Directory
 - Standard Output
 - Filter
 - Options
 - Debug
 - Verbose
 - Help
 - Report Warnings
 - Report Errors
 - Report Fatal Errors
 - Report Dying Program Messages
 - Output Base Filename
 - Show Accession Number in Report
 - Show Description in Report
 - Show Score in Report
 - Show Nucleotide Strand in Report
 - Show Full USA in Report
 - Maximum Total Hits
 - Maximum Hits for One Sequence
 - Turn Off Prompts
 - Menu
 - Use Monoisotopic Weights
 - MW Data
 - Unfavored
 - Allow Semi- and Non-Specific Digestion
 - Termini
 - Overlap
 - All Partials
Output Parameters:
 - Output File
File size:32.54 KB
View Source    Download    Open