Module Detail Information

Name:3D Merge
Type: Module
Short URL:
http://bit.ly/1BuiIlN
Description:This program has 2 different functions: (1) To edit 3D datasets in various ways (threshold, blur, cluster, ...); (2) To merge multiple datasets in various ways (average, max, ...). Either or both of these can be applied. The 'editing' operations are controlled by options that start with '-1', which indicates that they apply to individual datasets (e.g., '-1blur_fwhm'). The 'merging' operations are controlled by options that start with '-g', which indicate that they apply to the entire group of input datasets (e.g., '-gmax').
Executable:
/3dmerge
Input Parameters:
 - Copy Threshold Data
 - Copy Threshold Data (do not scale)
 - No Negative
 - Absolute Values
 - Clip Intensities (-val, val)
 - Clip Intensities (v1, v2)
 - Clip Int (-val, val) No Scaling
 - Clip Int (v1, v2) No Scaling
 - Threshold
 - Blur (sigma)
 - Blur (rms)
 - Blur (FWHM)
 - Blur Threshold (sigma)
 - Blur Threshold (rms)
 - Blur Threshold (FWHM)
 - Zero
 - Clustering 1 mm
 - Form Cluster
 - Form Cluster (avg int)
 - Form Cluster (max int)
 - Form Cluster (max abs int)
 - Form Cluster (max signed int)
 - Form Cluster (cluster size)
 - Form Cluster (cluter size index)
 - Erode
 - Dilate
 - Filiter (mean)
 - Filter (nonzero mean)
 - Filter (max int)
 - Filter (abs max int)
 - Filter (max signed int)
 - Filter (mean faster)
 - Threshold (mean)
 - Threshold (nonzero mean)
 - Threshold (max int)
 - Threshold (abs max int)
 - Threshold (max signed int)
 - Threshold (mean faster)
 - Multiply Intensities
 - Z Score
 - Datum
 - Keep Threshold
 - Do All
 - Data Source (j)
 - Data Source (k)
 - Filter (mask)
 - Filter (expr)
 - Filter (expr) - expr
 - Filter (Winsor)
 - Merge (mean)
 - Merge (nonzero mean)
 - Merge (max int)
 - Merge (max abs int)
 - Merge (max signed int)
 - Merge (count)
 - Merge (order)
 - Output Tanh
 - No Scaling
 - Merge Threshold
 - Delete Voxels
 - Form Clusters (connection distance)
 - Write Output to Diff Dir
 - Input Datasets
Output Parameters:
 - Output Dataset Prefix
File size:70.88 KB
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