Joshi AA, Pantazis D, Li Q, Damasio H, Shattuck D, Toga A, Leahy RM (2010) Sulcal set optimization for cortical surface registration, NeuroImage 50(3):950-9 Pantazis D, Joshi AA, Jintao J, Shattuck DW, Bernstein LE, Damasio H, and Leahy RM (2010) Comparison of landmark-based and automatic methods for cortical surface registration, NeuroImage49(3):2479-93 brainsuite diffusion http://brainsuite.org/ bmat bvec bval original nifti input original nifti input original nifti input y y- x x- z z- linear nearest cubic spline echo spacing ignore fieldmap fov fieldmap smooth echo spacing fieldmap correction fieldmap correction fieldmap correction fieldmap correction BrainSuite13 Copyright Notice Portions of this software are Copyright (C) 2002-2013 Regents of the University of California Portions of this software are Copyright (C) 1997-2013 University of Southern California All Rights Reserved. Created by David W. Shattuck, Anand A. Joshi, Chitresh Bhushan, Andrew C. Krause, Justin P. Haldar, and Richard M. Leahy. Licensing The BrainSuite software has been developed by David W. Shattuck, Anand A. Joshi, Chitresh Bhushan, Andrew C. Krause, Justin P. Haldar, and Richard M. Leahy. The software is provided free for use for non-commercial purposes under the following license terms. BrainSuite Software License, Version 2.0 The following terms apply to all files associated with the software unless explicitly disclaimed in individual files. 1. Permission is granted to use this software without charge for non-commercial research purposes only. You may make verbatim copies of this software for personal use, or for use within your organization, provided that you include copies of all of the original copyright notices and associated disclaimers with each copy of the software. 2. YOU MAY NOT DISTRIBUTE COPIES of this software, or copies of software derived from this software, to others outside your organization. 3. This software is for research purposes only and has not been approved for clinical use. 4. If you publish results whose generation used this software, you must provide attribution to the authors of the software by referencing the appropriate papers, as outlined on the BrainSuite website (http://brainsuite.org/attribution). 5. IN NO EVENT SHALL THE UNIVERSITY OF CALIFORNIA, THE UNIVERSITY OF SOUTHERN CALIFORNIA, THE AUTHORS, OR THE DISTRIBUTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS, ARISING OUT OF THE USE OF THIS SOFTWARE, ITS DOCUMENTATION, OR ANY DERIVATIVES THEREOF, EVEN IF THE AUTHORS HAVE BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. 6. THE UNIVERSITY OF CALIFORNIA, THE UNIVERSITY OF SOUTHERN CALIFORNIA, THE AUTHORS, AND THE DISTRIBUTORS SPECIFICALLY DISCLAIM ANY WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, AND NON-INFRINGEMENT. THIS SOFTWARE IS PROVIDED ON AN "AS IS" BASIS, AND THE AUTHORS AND DISTRIBUTORS HAVE NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR MODIFICATIONS.